![]() The timelapse images and the segmentation image described below must be opened in Fiji before starting ETrack. ![]() To run the tracker select Plugins › ETrack › Automated angle and curvature measurementįor a first analysis of your data, we suggest using the Curvature Measurement with Superpixel segmentation, in which we have pre-selected a number of parameters. The file format can be any format readable by Fiji/Bioformats (.tif. Launch the plugin with Plugins › ETrack.Ī typical dataset consists of a single two-dimensional (2d) image of the cells whose surface is oscillating over time.Click Close and then click Apply changes.Select the ETrack update site in the list.If you’d like to help, check out the how to help guide!ĮTrack is a tool, which computes the deformation of elliptically shaped deformed cells such as Embryo cells, imaged by either bright-field or fluorescent microscopy.įor using ETrack you have to provide a superpixel segmentation map of your cells in the timelapse image along with the original timelapse images coming out of the microscope. The content of this page has not been vetted since shifting away from MediaWiki.
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